.. _tutorials:

*********
Tutorials
*********


.. grid:: 2

    .. grid-item-card::

        Keeper tutorial
	^^^^^^^^^^^^^^^

	This tutorial walks through the Keeper data structure.

        +++

        .. button-ref:: notebooks/keeper_tutorial
            :expand:
            :color: secondary
            :outline:
            :click-parent:

            To the keeper tutorial

	       

    .. grid-item-card::

        POSE pipeline - multiple myeloma (MM) example
	^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^

	This tutorial walks through the POSE pipeline performed on
	single-modality RNA data of MM samples from COMPASS as
	described in the origianl manuscript. 

        +++

        .. button-ref:: notebooks/MM_paper_example
            :expand:
            :color: secondary
	    :outline:
            :click-parent:	    

            To the MM example

	    
    .. grid-item-card::

        POSE pipeline - extended multiple myeloma (MM) example
	^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^

	This tutorial is an extended version of the MM analysis that
	walks through the POSE pipeline performed on single-modality
	RNA data of MM samples from COMPASS as described in the
	origianl manuscript, with additional descriptions of alternative
	computational options.

        +++

        .. button-ref:: notebooks/MM_example
            :expand:
            :color: secondary
	    :outline:
            :click-parent:	    

            To the extended MM example
	    

	    
    .. grid-item-card::

        POSE pipeline - breast cancer (BC) example
	^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^

	This tutorial walks through the POSE pipeline for a single modality,
	and touches on the multi-omic fused analysis.
	The pipeline is demonstrated on BC rna data from TCGA.

        +++

        .. button-ref:: notebooks/BC_example
            :expand:
            :color: secondary
	    :outline:
            :click-parent:

            To the BC example	

	    
	    
    .. grid-item-card::

        POSE pipeline - glioblastoma multiforme (GBM) multi-modal example
	^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^

	This tutorial walks through the POSE pipeline for a multi-omic dataset.
	The pipeline is demonstrated on GBM data from TCGA.

        +++

        .. button-ref:: notebooks/GBM_multimodal_example
            :expand:
            :color: secondary
	    :outline:
            :click-parent:

            To the multi-modal GBM example


	    

.. toctree::
   :hidden:

   notebooks/keeper_tutorial
   notebooks/MM_paper_example
   notebooks/MM_example
   notebooks/BC_example
   notebooks/GBM_multimodal_example